Microsoft Intune Certificate Connector Failure

The Microsoft Intune Certificate Connector enables the provisioning and de-provisioning of on-premises PKI certificates for Intune-managed devices. Always On VPN administrators using Intune to deploy certificates with the Intune Certificate Connector using either PKCS or SCEP may encounter a scenario where certificates are no longer being provisioned to users or devices after working reliably previously.

Certificate Not Found

When this issue occurs, users will no longer be able to access the VPN and receive a “certificate could not be found that can be used with this Extensible Authentication Protocol” error message.

Connector Status

To determine the status of the Intune Certificate Connector, open the Microsoft Intune Admin Center (https://intune.microsoft.com) and navigate to Tenant Administration > Connectors and Tokens > Certificate Connectors. The status of the certificate connector server will be in Error.

Event Log

Open the event log on the server where the Intune Certificate Connector is installed. Navigate to Applications and Services Logs > Microsoft > Intune > CertificateConnectors > Operational. Here, you will find a variety of warning and error messages.

Event ID 5001

This is a warning from the CertificateConnectors source with event ID 5001 in the Task Category HealthMessageUploadFailedAttempt with the following details.

PKI Create Service:

Failed to upload health messages. Requeuing messages.

Event ID 1003

This is an error from the CertificateConnectors source with event ID 1003 in the Task Category PkcsDownloadFailure with the following details.

PKI Create Service:

Failed to download PKCS requests.

Event ID 2

This is an error from the CertificateConnectors source with event ID 2 in the Task Category Exception with the following details.

PKI Create Service:

Microsoft.Intune.Connectors.PkiCreateProcessor.Process threw an exception.

Expired Certificate

The warning and error messages recorded in the event log indicate an expired certificate on the Intune Certificate Connector server. Open the local computer certificate store (certlm.msc) on the server where the Intune Certificate Connector is installed. Review the expiration date of the certificate issued by Microsoft Intune ImportPFX Connector CA. It is most likely expired.

Click on the Certification Path tab to view the certificate status.

Renew Certificate

To renew this certificate, you must reinstall the Intune Certificate Connector. However, you do not have to uninstall it first. To renew the certificate, navigate to C:\Program Files\Microsoft Intune\PFXCertificateConnector\ConnectorUI and double-click on PFXCertificateConnectorUI.exe. Follow the prompts without making changes to the existing configuration. You’ll be prompted for the service account password (if using a domain account) and proxy credentials (if using a proxy server). In addition, you’ll be asked to sign in to Entra ID (formerly Azure AD). Be sure to provide credentials that are a global administrator and have an Intune license assigned. Once the process is complete, a new certificate will be installed in the local computer certificate store.

Intune Configuration

After updating the Intune Certificate Connector, a new certificate connector appears in the Intune Admin Center. You can now safely delete the old connector and rename the new one accordingly.

Redundancy

Deploying multiple instances of the Intune Certificate Connector is an excellent way to avoid future outages! It’s also a good idea to stagger their installation by a few months to ensure that a future certificate expiration doesn’t result in lost functionality. If you’ve deployed Intune Certificate Connectors recently, consider updating them at rotating intervals so certificates expire at different times.

Additional Information

Intune Certificate Connector Configuration Failed

Intune Certificate Connector Service Account and PKCS

Intune Certificate Connector Configuration Failure

Microsoft Intune Learning Resources for Always On VPN Administrators

Intune Certificate Connector Configuration Failed

Troubleshooting Always On VPN Error 691 and 812 – Part 2

The Microsoft Intune Certificate Connector must be deployed on-premises to provision and manage enterprise PKI certificates using Intune. The Intune Certificate Connector supports the deployment of SCEP, PKCS, PKCS imported certificates, or any combination of these. The connector can be configured to run under the SYSTEM account or optionally (and recommended) a domain service account. When using a service account, the service account must have permission to log on as a service on the server where the Intune Certificate Connector server.

Access is Denied

Even when all prerequisites are met, administrators may still find the installation of the Intune Certificate Connector fails with the following error message.

“Configuring Microsoft Intune Certificate Connector failed. No changes were made to Feature or Proxy settings. Please try again.”

“Unexpected Failure. Error: System.lnvalidOperationException: Cannot open PFXCertificateConnectorSvc service on computer ‘.’ System.ComponentModel.Win32Exception: Access is denied”

Workaround

After the connector installation fails, open the file explore and navigate to C:\Program Files\Microsoft Intune\PFXCertificateConnector\ConnectorUI. Right-click PFXCertificateConnectorUI.exe and choose ‘Run as administrator’.

Run through the connector installation wizard again, and it should install without issue.

To avoid this problem for future Intune Certificate Connector deployments, administrators can right-click the Intune Certificate Connector installer (IntuneCertificateConnector.exe) and choose ‘Run as administrator’.

Additional Information

Microsoft Intune Certificate Connector Configuration Failure (Part 1)

Microsoft Intune Certificate Connector Service Account and PKCS

Microsoft Intune Learning Resources for Always On VPN Admins

Microsoft Intune Certificate Connector Overview

Always On VPN Authentication Failed Reason Code 16

Strong authentication is essential for remote access to on-premises resources over the public Internet. Using the Protected Extensible Authentication Protocol (PEAP) in combination with user certificates issued by the organization’s internal certification authority (CA) provides high assurance for remote user authentication. It includes the added benefit of making the Always On VPN connection completely seamless for the user, as their certificate is presented to the authentication server transparently during VPN connection establishment. Using PEAP with user certificates is the recommended authentication method for Always On VPN deployments.

Reason Code 16

When configuring Always On VPN to use PEAP with client authentication certificates, administrators may encounter a scenario in which a user has a valid certificate. Yet, their authentication request is rejected by the Network Policy Server (NPS) server when attempting to connect remotely. Looking at the Security event log on the NPS server, administrators will find a corresponding event ID 6273 in the Network Policy Server task category from the Microsoft Windows security auditing event source. In the Authentication Details section, you’ll find that the reason code for the failed request is Reason Code 16, with the following reason specified.

“Authentication failed due to a user credentials mismatch. Either the user name provided does not map to an existing user account or the password was incorrect”.

Password Incorrect?

The reason code indicates the user may have entered an incorrect password. However, the user does not enter their password when using PEAP with client authentication certificates, so there’s no chance the password was entered incorrectly.

TPM

I have increasingly encountered this scenario with many customers deploying Always On VPN over the last year or so. This error is often caused by a known issue with older TPM models. Specifically, those with a TPM specification sub-version of 1.16 and earlier. You can view these TPM details by opening the Windows Settings app and entering ‘security processor’ in the search field.

Workaround

These older TPM models seem to have an issue with RSA-PSS signature algorithms, as described here. If possible, administrators should upgrade devices with older TPM versions to ensure the highest level of security and assurance for their remote users. However, in cases where that is not feasible, administrators can remove RSA-PSS signature algorithms from the registry, which forces the use of a different signature algorithm and seems to restore functionality.

To do this, open the registry editor (regedit.exe) and navigate to the following registry key.

HKLM\SYSTEM\CurrentControlSet\Control\Cryptography\
Configuration\Local\SSL\00010003\

Double-click the Functions entry and remove the following algorithms from the Value data section.

  • RSAE-PSS/SHA256
  • RSAE-PSS/SHA384
  • RSAE-PSS/SHA512

Once complete, reboot the device and test authentication once again.

Intune Proactive Remediation

Administrators using Intune Proactive Remediation will find detection and remediation scripts to make these changes published on GitHub.

Detect-RsaePss.ps1

Remediate-RsaePss.ps1

Additional Information

Windows TPM 2.0 Client Authentication in TLS 1.2 with RSA PSS

Always On VPN NPS Auditing and Logging

Always On VPN NPS RADIUS Configuration Missing

Always On VPN NPS Load Balancing